YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|326467, gi\|74660
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.47
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRAKGIRK NCQHLWRWGT MLLGMLMICS AAANLWVTVY YGVPVWKEAT TTLFCASDAK  60
   61 AYDTEAHNVW ATHACVPTNP NPQEVVLENV TENFNMWKNN MVEQMHEDII SLWDQSLKPC 120
  121 VKLTPLCVTL NCTDLNTNNT TNTTELSIIV VWEQRGKGEM RNCSFNITTS IRDKVQREYA 180
  181 LFYKLDVEPI DDNKNTTNNT KYRLINCNTS VITQACPKVS FEPIPIHYCT PTGFALLKCN 240
  241 DKKFNGTGPC TNVSTVQCTH GIRPVVSTQL LLNGSLAEEE VVIRSENFTN NAKTIIVQLN 300
  301 VSVEINCTRP NNHTRKRVTL GPGRVWYTTG EILGNIRQAH CNISRAQWNN TLQQIATTLR 360
  361 EQFGNKTIAF NQSSGGDPEI VMHSFNCGGE FFYCNSTQLF NSAWNVTSNG TWSVTRKQKD 420
  421 TGDIITLPCR IKQIINRWQV VGKAMYALPI KGLIRCSSNI TGLLLTRDGG GENQTTEIFR 480
  481 PGGGDMRDNW RSELYKYKVV KIEPLGVAPT KAKRRVVQRE KRAVGMLGAM FLGFLGAAGS 540
  541 TMGATSMALT VQARQLLSGI VQQQNNLLRA IKAQQHLLQL TVWGIKQLQA RILAVERYLK 600
  601 DQQLLGFWGC SGKLICTTAV PWNASWSNKT LDQIWNNMTW MEWDREIDNY THLIYTLIEE 660
  661 SQNQQEKNQQ ELLQLDKWAS LWTWSDITKW LWYIKIFIMI VGGLIGLRIV FAVLSIVNRV 720
  721 RQGYSPLSFQ TLLPNPRGPD RPEGTEEGGG ERGRDGSTRL VHGFLALVWD DLRSLCLFSY 780
  781 HRLRDLLLIV ARIVELLGRR GWEVLKYWWN LLQYWSQELK NSAVSLVNVT AIAVAEGTDR 840
  841 VIEVVQRIYR AFLHIPRRIR QGFERALL

Type	Start	End	Confidence
Signal Peptide	1	33	0.46
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	523	0.98
Transmembrane Helix	524	546	0.90
Cytoplasmic	547	690	0.77
Transmembrane Helix	691	712	0.92
Non-Cytoplasmic	713	868	0.65