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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|327782
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKGIRKNY QHLWRWGTML LGILMICSAA EQLWVTVYYG VPVWKEAATT LFCASDAKAY  60
   61 DTEVHNVWAT HACVPTDPNP QEVVLENVTE KFNMWKNNMV EQMHEDIISL WDQSLKPCVK 120
  121 LTPLCVTLNC IDWGNDTSPN ATNTTSSGGE KMEKGEMKNC SFNITTSIRD KVQKEHALFY 180
  181 KHDVVPINNS TKDNIKNDNS TRYRLISCNT SVITQACPKI SFEPIPIHYC APAGFAIIKC 240
  241 NDKKFNGTGP CTNVSTVQCT HGIKPVVSTQ LLLNGSLAEE EVVIRSENFT DNAKTIIVQL 300
  301 KEPVVINCTR PSKTTRRRIH IGPGRAFYTT KQIAGDLRQA HCNINRARWN ATLKQIVGKL 360
  361 RKQFVNKTIV FNRSSGGDPE IVMHSFNCGG EFFYCNSTQL FNSTWLSNST WNDTEGSNNT 420
  421 GGNDTITLPC RIKQIINMWQ EVGKAMYAPP IEGQIRCSSN ITGLLLTRDG GDNQNETETF 480
  481 RPGGGNMRDN WRSELYKYKV VKIELLGVAP TKAKRRVVQR EKRAVGIGAV FLGFLGAAGS 540
  541 TMGASMTLTV QARLLLSGIV QQQNNLLRAI EGQQHLLQLT VWGIKQLQAR ILAVERYLKD 600
  601 QQLLGIWGCS GKLICTTAVP WNASWSNKSL EEIWDNMTWM EWEREIDNYT SLIYTLIEES 660
  661 QNQQEKNEQE LLGLDKWASL WNWFTITNWL WYIRIFIMIV GGLVGLRIVF TVLSIVNRVR 720
  721 QGYSPLSFQT RLPAPRGPDR PEGIEEEGGD RDRDRSGQLV DGLLAIIWVD LRSLCLFSYH 780
  781 RLRDLLLIVT RIVELLGRRG WEALKYWWNL LQYWSQELKN SAVSLFNAIA IAVAEGTDRV 840
  841 LKILQRAFRA ILHIPTRIRQ GLERALL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle