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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|328037
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.65
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKGIRRNY QHWWGWGTML LGLLMICSAT EKLWVTVYYG VPVWKEATTT LFCASDAKAY  60
   61 DTEVHNVWAT QACVPTDPNP QEVELVNVTE NFNMWKNNMV EQMHEDIISL WDQSLKPCVK 120
  121 LTPLCVTLNC TDLRNTTNTN NSTANNNSNS EGTIKGGEMK NCSFNITTSI RDKMQKEYAL 180
  181 LYKLDIVSID NDSTSYRLIS CNTSVITQAC PKISFEPIPI HYCAPAGFAI LKCNDKKFSG 240
  241 KGSCKNVSTV QCTHGIRPVV STQLLLNGSL AEEEVVIRSE NFTDNAKTII VHLNESVQIN 300
  301 CTRPNYNKRK RIHIGPGRAF YTTKNIIGTI RQAHCNISRA KWNDTLRQIV SKLKEQFKNK 360
  361 TIVFNQSSGG DPEIVMHSFN CGGEFFYCNT SPLFNSTWNG NNTWNNTTGS NNNITLQCKI 420
  421 KQIINMWQEV GKAMYAPPIE GQIRCSSNIT GLLLTRDGGK DTDTNDTEIF RPGGGDMRDN 480
  481 WRSELYKYKV VTIEPLGVAP TKAKRRVVQR EKRAAIGALF LGFLGAAGST MGAASVTLTV 540
  541 QARLLLSGIV QQQNNLLRAI EAQQHMLQLT VWGIKQLQAR VLAVERYLKD QQLLGFWGCS 600
  601 GKLICTTTVP WNASWSNKSL DDIWNNMTWM QWEREIDNYT SLIYSLLEKS QTQQEKNEQE 660
  661 LLELDKWASL WNWFDITNWL WYIKIFIMIV GGLVGLRIVF AVLSIVNRVR QGYSPLSLQT 720
  721 RPPVPRGPDR PEGIEEEGGE RDRDTSGRLV HGFLAIIWVD LRSLFLFSYH HRDLLLIAAR 780
  781 IVELLGRRGW EVLKYWWNLL QYWSQELKSS AVSLLNATAI AVAEGTDRVI EVLQRAGRAI 840
  841 LHIPTRIRQG LERALL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle