YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1072770, gi|3...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVRGIERNC QNLWKWGIML LGILMTCSNA DNLWVTVYYG VPVWKEATTT LFCASDAKSY  60
   61 KTEAHNIWAT HACVPTDPNP QEIELENVTE NFNMWRNNMV EQMHEDIISL WDQSLKPCVK 120
  121 LTPLCVTLNC IDEVMENVTM KNNNVTEEIR MKNCSFNITT VVRDKTKQVH ALFYRLDIVP 180
  181 IDNDNSTNST NYRLINCNTS AITQACPKVS FEPIPIHYCA PAGFAILKCR DKRFNGTGPC 240
  241 TNVSTVQCTH GIRPVVSTQL LLNGSLAEEE IIIRSENLTN NAKIIIVQLN ESVAINCTRP 300
  301 YRNIRQRTSI GLGQALYTTK TRSIIGQAYC NISKNEWNKT LQQVAIKLGN LLNKTTIIFK 360
  361 PSSGGDPEIT THSFNCGGEF FYCNTSGLFN STWDISKSEW ANSTESDDKP ITLQCRIKQI 420
  421 INMWQGVGKA MYAPPIEGQI NCSSNITGLL LTRDGGTNNS SNETFRPGGG DMRDNWRSEL 480
  481 YKYKVVKIEP LGVAPTRAKR RVVEREKRAI GLGAMFLGFL GAAGSTMGAR SLTLTVQARQ 540
  541 LLSGIVQQQN NLLRAIEAQQ HLLQLTVWGI KQLQARILAV ERYLKDQQLL GIWGCSGKLI 600
  601 CTTTVPWNSS WSNRSLNDIW QNMTWMEWER EIDNYTGLIY RLIEESQTQQ EKNEQELLEL 660
  661 DKWASLWNWF NITQWLWYIK IFIMIVGGLI GLRIVFAVLS LVNRVRQGYS PLSFQTLLPA 720
  721 PRGPDRPEGI EEEGGERGRD RSIRLVNGFS ALIWDDLRNL CLFSYHRLRD LILIAARIVE 780
  781 LLGRRGWEAL KYLWNLLQYW SRELKNSASS LLDTIAIAVA EGTDRVIEIV RRACRAVLHI 840
  841 PTRIRQGLER LLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle