YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|329389
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKEIQRNY QHLWKWSLII LGMIMICKAI EKSWVTVYYG VPVWKDAETT LFCASDAKAY  60
   61 EKESHNVWAT HACVPSDPSP QELVLGNVTE NFNMWKNKMV EQMHEDIISL WDQSLKPCVK 120
  121 LTFLCVTLNC IDVKNSTNNN TEEATITNCS FKVPTELKDK TETVHTLFYK LDVVPLNVTN 180
  181 NSSISSTYRL INCNTSTITQ ACPKVSFEPI PIHYCAPAGF AILKCNDKKF NGTGPCKNVS 240
  241 TVQCTHGIRP VVSTQLLLNG SLSEEEVIIR SENITNNAKT IIVQLNETVK INCTRPGSDK 300
  301 KIRQSIRIGP GKVFYAKGGI TGQAHCNITD GEWRNTLQQV AIALRRQFNN KSIIFNSSSG 360
  361 GDIEITTHTF NCGGEFFYCN TSELFTGIWN GTWDKNCTST ESNCTGNITL PCRIKQVVRT 420
  421 WQGVGQAMYA PPIEGTIRCS SNITGLLLTR DGGNGKCNSK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.50
Transmembrane Helix	12	30	0.48
Non-Cytoplasmic	31	460	0.99