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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|329403
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAREIERNC PNLWKWGIML LGILMICSAA DNLWVTVYYG VPVWKEATTT LFCASDAKSY  60
   61 KTEAHNIWAT HACVPTDPNP QEIELENVTE NFNMWRNNMV EQIHEDIISL WDQSLKPCVK 120
  121 LTPLCVTLNC TDESDEWMGN VTGKNVTEDI RMKNCSFNIT TVVRDKTKQV HALFYRLDIV 180
  181 PIDNDNSTNS TNYRLINCNT SAITQACPKV SFEPIPIHYC APAGFAILKC RDKRFNGTGP 240
  241 CTNVSTVQCT HGIRPVVSTQ LLLNGSLAEE EIIIRSENLT NNAKIIIVQL NESVAINCTR 300
  301 PYKNTRQSTP IGLGQALYTT RGRTKIIGQA HCNISKEDWN KTLQRVAIKL GNLLNKTTII 360
  361 FKPSSGGDAE ITTHSFNCGG EFFYCNTSGL FNSTWNINNS EGANSTESDN KLITLQCRIK 420
  421 QIINMWQGVG KAMYAPPIEG QINCSSNITG LLLTRDGGTN NSSNETFRPG GGDMRDNWRS 480
  481 ELYKYKVVKI EPLGVAPTKA KRRVVEREKR AIGLGAMFLG FLGAAGSTMG AASVTLTVQA 540
  541 RQLMSGIVQQ QNNLLRAIEA QQHLLQLTVW GIKQLQARIL AVERYLKDQQ LLGIWGCSGK 600
  601 LICTTTVPWN SSWSNRSLND IWQNMTWMEW EREIDNYTGL IYRLIEESQT QQEKNEQELL 660
  661 ELDKWASLWN WFNITQWLWY IKIFIMIVGG LIGLRIVFAV LSLVNRVRQG YSPLSFQTLL 720
  721 PAPREPDRPE GIEEEGGERG RDRSIRLVNG FSALIWDDLR NLCLFSYHRL RDLILIAARI 780
  781 VELLGRRGWE ALKYLWNLLQ YWSRELRNSA SSLLDTIAIA VAEGTDRVIE IVRRTYRAVL 840
  841 NVPTRIRQGL ERLLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle