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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|726201
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRNQLIVA ILLTSACLIY CAQYVTVFYG IPAWKNASIP LFCATRNRDT WGTIQCLPDN  60
   61 DDYQEIPLNV TEAFDAWNNT VTEQAVEDVW NLFETSVKPC VKLTPLCVQM ECNSTSTESS 120
  121 NSTSEGSTVP EILNETTSCI TNNSCSDLGS EEVVDCRFNM TGLQLDKPQQ YSETWYSKDV 180
  181 VCDTTNGTSR KCYMNHCNTS VITESCDKHY WDAMRFRYCA PPGLCLLRCN DTNYSGFEPK 240
  241 CPKVVAATCT RMMETQTSTW FGFNGTRAEN RTYIYWHGRD NRTIISLNTH YNLTMHCKRP 300
  301 GNKSVLPITL RSGRVFHSRP IINERPKQAW CWFGGDWKKA MQEVKQTLVK HPRYRGTNDT 360
  361 QKINFTQPGK GSDAEVVYMW TNCRGEFLYC NMTRFLNWIE NRAHPQRNYA PCHIRQIINT 420
  421 WHRVGQNIYL PPREGELVCN STVTSIIANI DMFDNQTSIT FSAEVAELYR LELGDYKLVE 480
  481 ITPIGFAPTS EKRYSSAPQR NKRGVFVLGV LGFLATAGSA MGAASLTLSA HPGLYWAGIV 540
  541 QQQQQLLDVV KRQQEMLRLT VWGTKNLQTR VTAIEKYLRD QARLNSWGCA FRQVCYTTVL 600
  601 WENNSIVPDW NNMTWQEWEQ QTRDLEANIS RSLEQAQIQQ EKNMYELQKL NSWDVFGNWF 660
  661 DLTSWIKYIQ YGVYVIIGII ALRIVIYVVQ LLSRLRKGYR PVFSSPPGYI QQIHIHKDWE 720
  721 QPDREETDED AGNSIGDSSW PWPIAYIHFL IRQLIRLLTG LYSVCKDLLS RSFPTLQLIF 780
  781 QSLQRALTTI RDWLRLTIAY LQYGCEWIQE VLQVLARTTR ETLASAWRDL WGAMGRIGRG 840
  841 ILAVPRRIRQ GAELALL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle