YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG11_BRANA
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAFPHVCL WTLLAFVLTW TVFYVNNRRK KVAKLPDAAT EVRRDGDADV IIVGAGVGGS  60
   61 ALAYALAKDG RRVHVIERDM REPVRMMGEF MQPGGRLLLS KLGLEDCLEG IDEQIATGLA 120
  121 VYKDGQKALV SFPEDNDFPY EPTGRAFYNG RFVQRLRQKA SSLPTVQLEE GTVKSLIEEK 180
  181 GVIKGVTYKN SAGEETTAFA PLTVVCDGCY SNLRRSVNDN NAEVISYQVG YVSKNCQLED 240
  241 PEKLKLIMSK PSFTMLYQIS STDVRCVMEI FPGNIPSISN GEMAVYLKNT MAPQVPPELR 300
  301 KIFLKGIDEG AQIKAMPTKR MEATLSEKQG VIVLGDAFNM RHPAIASGMM VVLSDILILR 360
  361 RLLQPLRNLS DANKVSEVIK SFYVIRKPMS ATVNTLGNAF SQVLIASTDE AKEAMRQGCF 420
  421 DYLSSGGFRT SGMMALLGGM NPRPLSLIFH LCGITLSSIG QLLSPFPSPL GIWHSLRLFG 480
  481 AEGVSQMLSP AYAAAYRKSY MTATAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.68
Transmembrane Helix	7	26	0.76
Cytoplasmic	27	47	0.72
Transmembrane Helix	48	67	0.39
Non-Cytoplasmic	68	341	0.61
Transmembrane Helix	342	359	0.45
Cytoplasmic	360	445	0.69
Transmembrane Helix	446	464	0.78
Non-Cytoplasmic	465	477	0.59
Transmembrane Helix	478	496	0.42
Cytoplasmic	497	506	0.55