YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|161077481, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSCSCTRRH FLLSICFLQV ITIIERQVFD FLGYMWAPIL VNFFHILFII FGFYGAYHFR  60
   61 VKYIITYLIW NFLWIGWNTF LICFYLNVGQ LNRVSFDSDL LNLGTGSVSW FEANGYGCKP 120
  121 TYNMAADDTF RPQRPERVEG CLLDYPLVEI THSGVQCALA LLGILGAILI SCIFLDEDDR 180
  181 LKHIRKQSKH RQSLYSIEFG SSTDTIRHGG HSLGLGDPRG DQDGGELSPK PMTPRRVKRR 240
  241 SVMARGTQGR QSNGGGSSRR SYHGSSGTLR SKHGHSGRGG GADSSSGSYV RSSTRSSRRK 300
  301 YHQNPVTKII DQQLQQEQPH LGSFHRQDKL SLTASNLQSL NNDFVNNTNA SGSQLGSLGK 360
  361 PNEHYYHSYR KNIPLDPIYY NTNGLGALEE PPSLPPPPPL PSAAGASILH AGGGGHYNPS 420
  421 YQHSTTHLND VGHAPDEVYN NRPPSVRSSY SNFHGSRPLS TAYGNATGEN VFAGLNGASA 480
  481 SPPQAPCTPP LYQQHPMQLQ QHQQQQYPPP PPMDPAPAYV STMSFSKRTA SRESIRSMAF 540
  541 LNNGPPAYNL NYHTPPDSET TM

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	29	0.85
Non-Cytoplasmic	30	35	0.80
Transmembrane Helix	36	57	0.92
Cytoplasmic	58	66	0.79
Transmembrane Helix	67	88	0.91
Non-Cytoplasmic	89	154	0.96
Transmembrane Helix	155	175	0.73
Cytoplasmic	176	562	0.72