YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD3C_SESIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWVLSECG LRPLPRVYPK PRTGHPLLNS NPTKLRFSRT DLGNGSSFCL SSGILREKNW  60
   61 ALRVSAPLRV LQVEEEEENK EGERVINGGE EFDPGAPPPF KLSDIREAIP KHCWVKDPWR 120
  121 SMGYVVRDVA VVFGLAAVAA YFNNWVVWPL YWFAQSTMFW ALFVLGHDCG HGSFSNDPKL 180
  181 NSVVGHILHS SILVPYHGWR ISHRTHHQNH GHVENDESWH PLSEKIYKNL DTATKKLRFT 240
  241 LPFPLLAYPI YLWSRSPGKQ GSHFHPDSDL FVPNEKKDVI TSTVCWTAML ALLVGLSFVI 300
  301 GPVQLLKLYG IPYLGNVMWL DLVTYLHHHG HEDKLPWYRG KEWSYLRGGL TTLDRDYGWI 360
  361 NNIHHDIGTH VIHHLFPQIP HYHLIEATEA AKPVLGKYYR EPKKSAPLPF HLLGDLTRSL 420
  421 KRDHYVSDVG DVVYYQTDPQ LTGAEKS

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	142	0.91
Non-Cytoplasmic	143	150	0.60
Transmembrane Helix	151	170	0.66
Cytoplasmic	171	282	0.74
Transmembrane Helix	283	303	0.84
Non-Cytoplasmic	304	309	0.60
Transmembrane Helix	310	329	0.41
Cytoplasmic	330	447	0.61