YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197251527, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESDDDKT EAPTPHRLEK AREEGQIPRS RELTSLLILL VGVCIIWFGG ESLARQLAGM  60
   61 LSAGLHFDHR MVNDPNLILG QIILLIKAAM MALLPLIAGV VLVALISPVM LGGLIFSGKS 120
  121 LQPKFSKLNP LPGIKRMFSA QTGAELLKAV LKSTLVGCVT GFYLWHHWPQ MMRLMAESPI 180
  181 VAMGNALDLV GLCALLVVLG VIPMVGFDVF FQIFSHLKKL RMSRQDIRDE FKESEGDPHV 240
  241 KGKIRQMQRA AAQRRMMEDV PKADVIVTNP THYSVALQYD ENKMSAPKVV AKGAGLIALR 300
  301 IREIGAEHRV PTLEAPPLAR ALYRHAEIGQ QIPGQLYAAV AEVLAWVWQL KRWRLAGGQR 360
  361 PPQPENLPVP EALDFMNEKN TDG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	54	0.87
Non-Cytoplasmic	55	91	0.83
Transmembrane Helix	92	116	0.86
Cytoplasmic	117	145	0.92
Transmembrane Helix	146	167	0.88
Non-Cytoplasmic	168	188	0.87
Transmembrane Helix	189	214	0.88
Cytoplasmic	215	383	0.93