YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLRA3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHVRHFRTL LSGFYFWEAA LLLSLVATKE TNSARSRSAP MSPSDFLDKL MGRTSGYDAR  60
   61 IRPNFKGPPV NVTCNIFINS FGSIAETTMD YRVNIFLRQK WNDPRLAYSE YPDDSLDLDP 120
  121 SMLDSIWKPD LFFANEKGAN FHEVTTDNKL LRIFKNGNVL YSIRLTLTLS CPMDLKNFPM 180
  181 DVQTCIMQLE SFGYTMNDLI FEWQDEAPVQ VAEGLTLPQF LLKEEKDLRY CTKHYNTGKF 240
  241 TCIEVRFHLE RQMGYYLIQM YIPSLLIVIL SWVSFWINMD AAPARVALGI TTVLTMTTQS 300
  301 SGSRASLPKV SYVKAIDIWM AVCLLFVFSA LLEYAAVNFV SRQHKELLRF RRKRKNKTEA 360
  361 FALEKFYRFS DTDDEVRESR LSFTAYGMGP CLQAKDGVVP KGPNHAVQVM PKSADEMRKV 420
  421 FIDRAKKIDT ISRACFPLAF LIFNIFYWVI YKILRHEDIH HQQD

Type	Start	End	Confidence
Signal Peptide	1	33	0.47
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	254	0.69
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	283	0.56
Transmembrane Helix	284	302	0.68
Non-Cytoplasmic	303	317	0.71
Transmembrane Helix	318	340	0.89
Cytoplasmic	341	430	0.88
Transmembrane Helix	431	451	0.82
Non-Cytoplasmic	452	464	0.85