YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTPX_ECOBW
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIALFLLT NLAVMVVFGL VLSLTGIQSS SVQGLMIMAL LFGFGGSFVS LLMSKWMALR  60
   61 SVGGEVIEQP RNERERWLVN TVATQARQAG IAMPQVAIYH APDINAFATG ARRDASLVAV 120
  121 STGLLQNMSP DEAEAVIAHE ISHIANGDMV TMTLIQGVVN TFVIFISRIL AQLAAGFMGG 180
  181 NRDEGEESNG NPLIYFAVAT VLELVFGILA SIITMWFSRH REFHADAGSA KLVGREKMIA 240
  241 ALQRLKTSYE PQEATSMMAL CINGKSKSLS ELFMTHPPLD KRIEALRTGE YLK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.95
Non-Cytoplasmic	28	33	0.81
Transmembrane Helix	34	54	0.92
Cytoplasmic	55	151	0.97
Transmembrane Helix	152	175	0.82
Non-Cytoplasmic	176	192	0.92
Transmembrane Helix	193	217	0.89
Cytoplasmic	218	293	0.99