YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTPX_SALPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIALFLLT NLAVMVVFGL VLSLTGIQSS SVQGLLIMAL LFGFGGSFIS LLMSKWMALK  60
   61 SVGGEVIEQP RNERERWLMN TVATQARQAG IAMPQVAIYH APDINAFATG ARRDASLVAV 120
  121 STGLLQNMSP DEAEAVIAHE ISHIANGDMV TMTLIQGVVN TFVIFISRII AQIAAGFLGG 180
  181 NRDEGEGSNG NPLIYFAVAT VLELVFGILA SIITMWFSRY REFHADAGSA KLVGREKMIA 240
  241 ALQRLKTSYE PQEATSMMAF CINGKSKSLS ELFMTHPPLD KRIEALRSGE YLK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.95
Non-Cytoplasmic	28	33	0.81
Transmembrane Helix	34	53	0.94
Cytoplasmic	54	152	0.96
Transmembrane Helix	153	175	0.84
Non-Cytoplasmic	176	192	0.89
Transmembrane Helix	193	217	0.89
Cytoplasmic	218	293	0.99