YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTPX_YERPN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRIALFLLT NLAVMLVFGL VLSLTGIQSS SVQGLMIMAG LFGFGGAFVS LLMSKWMALR  60
   61 SVGGEVIERP RNETEYWLLE TVRRQSQQVG IAMPQVAIYQ APDINAFATG ARRDASLVAV 120
  121 STGLLQNMSR DEAEAVIAHE ISHVANGDMV TMTLIQGVVN TFVIFISRLI AQIAAGFLSG 180
  181 DRDGESNSPG NPMVYFAVSM VLELVFGILA SIITMWFSRH REFHADAGSA KLVGREKMIA 240
  241 ALQRLKTSYE PQEAGSMMAF CINGKSKTFS ELFMSHPPLD KRIEALRSGQ YLK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.95
Non-Cytoplasmic	28	34	0.77
Transmembrane Helix	35	54	0.93
Cytoplasmic	55	152	0.97
Transmembrane Helix	153	175	0.83
Non-Cytoplasmic	176	193	0.88
Transmembrane Helix	194	217	0.91
Cytoplasmic	218	293	0.99