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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: KCNB1_RABIT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGMTKHGS RSASSLPPEP MEIVRSKACS RRVRLNVGGL AHEVLWRTLD RLPRTRLGKL  60
   61 RDCNTHDSLL EVCDDYSLDD NEYFFDRHPG AFTSILNFYR TGRLHMMEEM CALSFSQELD 120
  121 YWGIDEIYLE SCCQARYHQK KEQMNEELKR EAETLREREG EEFDNTCCAE KRKKLWDLLE 180
  181 KPNSSVAAKI LAIISIMFIV LSTIALSLNT LPELQSLDEF GQTTDNPQLA HVEAVCIAWF 240
  241 TMEYLLRFLS SPKKWKFFKG PLNAIDLLAI LPYYVTIFLT ESNKSVLQFQ NVRRVVQIFR 300
  301 IMRILRILKL ARHSTGLQSL GFTLRRSYNE LGLLILFLAM GIMIFSSLVF FAEKDEDDTK 360
  361 FKSIPASFWW ATITMTTVGY GDIYPKTLLG KIVGGLCCIA GVLVIALPIP IIVNNFSEFY 420
  421 KEQKRQEKAI KRREALERAK RNGSIVSMNM KDAFARSVEM MDIVVEKNGE NLAKKEKVQD 480
  481 NHLSPNKWKW TKRTLSETSS SKSFETKEQG SPEKARSSSS PQHLNVQQLE DMYNKMAKTQ 540
  541 SQPVLNTKEA AAQSKPKEEL EMESIPSPVA PLPTRTEGVI DMRSMSSIDS FISCATDFPE 600
  601 ATRFSHSPLA SLPTKAGGGA APELGWRGAL GASGGRLVEA NPTPDASHGS GFFIESPKSS 660
  661 MKTNNPLKLR ALKVNFMAGE PGPLLPVLGM YHDPLRTRGG AAAAVAGLEC ATLLDKPVLS 720
  721 PESSIYTTAS ARTPPRSPEK PTAIAFNFEA GVHQYIDADT DDEGQLLYSV DSSPPKSLHG 780
  781 GASPKCSIGA RSEKNHFESA PLPTSPKFLR QNCIYSTEGL TGKSLSGQEK CKLGNHISPD 840
  841 VRVLPGGGAH GSTRDQSL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle