YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYAM2_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSQYLSAL TFVLLLFKES RTWSYHASTE MMTFEEARDY CQKTYTALVA IQNQEEIEYL  60
   61 NSTFSYSPSY YWIGIRKING TWTWIGTNKS LTKEATNWAP GEPNNKQSDE DCVEIYIKRE 120
  121 KDSGKWNDEK CTKQKLALCY KAACNPTPCG SHGECVETIN NYTCQCHPGF KGLKCEQVVT 180
  181 CPAQKHPEHG HLVCNPLGKF TYNSSCSISC AEGYLPSSTE ATRCMSSGEW STPLPKCNVV 240
  241 KCDALSNLDN GVVNCSPNHG SLPWNTTCTF ECQEGYKLTG PQHLQCTSSG IWDNKQPTCK 300
  301 AVSCAAISHP QNGTVNCSHS VVGDFAFKSS CHFTCAEGFT LQGPTQVECT AQGQWTQRVP 360
  361 VCEVVRCSRL DVSGKLNMNC SGEPVLGTEC TFACPERWTL NGSVVLTCGA TGHWSGMLPT 420
  421 CEAPTVSQTP LAVGLSTAGV SLVTIPSFLF WLLKRLQKKA KKFSPASSCS SLKSNGCYST 480
  481 PSKLI

Type	Start	End	Confidence
Signal Peptide	1	24	0.88
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	431	0.98
Transmembrane Helix	432	453	0.93
Cytoplasmic	454	485	0.97