YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LEP4_PSEST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVEFLASN PLAFVLCALV LGLLVGSFLN VVIHRLPIMM QRDWQSQARE FLELPAEPAG  60
   61 AAFNLFLPHS RCPHCDHQIR AWENIPLISW LALRGKCSAC KASISKRYPL VELACGLLSG 120
  121 YVAWHFGFSW QAGAMLLLTW GLLAMSMIDV DHQLLPDSLV LPLLWLGLII NSFGLFASLE 180
  181 DALWGAVVGY LALWSVYWLF KLVTGKEGMG YGDFKLLAML GAWGGWQVLP LTILLSSVVG 240
  241 AVLGTVMLRM QKAESGTPIP FGPYLAIAGW VALLWGDQIT ASYLQFARL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	33	0.95
Cytoplasmic	34	112	0.87
Transmembrane Helix	113	144	0.68
Non-Cytoplasmic	145	153	0.53
Transmembrane Helix	154	177	0.80
Cytoplasmic	178	181	0.56
Transmembrane Helix	182	202	0.83
Non-Cytoplasmic	203	225	0.65
Transmembrane Helix	226	248	0.89
Cytoplasmic	249	256	0.66
Transmembrane Helix	257	279	0.79
Non-Cytoplasmic	280	289	0.65