YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218702372, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.75
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	40	0.65
Transmembrane Helix	41	60	0.93
Non-Cytoplasmic	61	70	0.64
Transmembrane Helix	71	95	0.84
Cytoplasmic	96	115	0.69
Transmembrane Helix	116	133	0.80
Non-Cytoplasmic	134	134	0.23
Transmembrane Helix	135	156	0.68
Cytoplasmic	157	157	0.39
Transmembrane Helix	158	186	0.75
Non-Cytoplasmic	187	193	0.64
Transmembrane Helix	194	213	0.88
Cytoplasmic	214	222	0.55
Transmembrane Helix	223	241	0.73
Non-Cytoplasmic	242	248	0.72
Transmembrane Helix	249	266	0.91
Cytoplasmic	267	301	0.87
Transmembrane Helix	302	324	0.79
Non-Cytoplasmic	325	367	0.87
Transmembrane Helix	368	387	0.95
Cytoplasmic	388	405	0.84
Transmembrane Helix	406	427	0.87
Non-Cytoplasmic	428	435	0.70
Transmembrane Helix	436	456	0.88
Cytoplasmic	457	465	0.71
Transmembrane Helix	466	488	0.63
Non-Cytoplasmic	489	497	0.55
Transmembrane Helix	498	515	0.72
Cytoplasmic	516	526	0.76
Transmembrane Helix	527	546	0.94
Non-Cytoplasmic	547	551	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLWQQNYDP AGNIWLSSLI ASLPILFFFF ALIKLKLKGY VAASWTVAIA LAVALLFYKM  60
   61 PVANALASVV YGFFYGLWPI AWIIIAAVFV YKISVKTGQF DIIRSSILSI TPDQRLQMLI 120
  121 VGFCFGAFLE GAAGFGAPVA ITAALLVGLG FKPLYAAGLC LIVNTAPVAF GAMGIPILVA 180
  181 GQVTGIDSFE IGQMVGRQLP FMTIIVLFWI MAIMDGWRGI KETWPAVVVA GGSFAIAQYL 240
  241 SSNFIGPELP DIISSLVSLL CLTLFLKRWQ PVRVFRFGDL GASQVDMTLA HTGYTAGQVL 300
  301 RAWTPFLFLT ATVTLWSIPP FKALFASGGA LYEWVINIPV PYLDKLVARM PPVVSEATAY 360
  361 AAVFKFDWFS ATGTAILFAA LLSIVWLKMK PSDAISTFGS TLKELALPIY SIGMVLAFAF 420
  421 ISNYSGLSST LALALAHTGH AFTFFSPFLG WLGVFLTGSD TSSNALFAAL QATAAQQIGV 480
  481 SDLLLVAANT TGGVTGKMIS PQSIAIACAA VGLVGKESDL FRFTVKHSLI FTCMVGVITT 540
  541 LQAYVLTWMI P