YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_ECO57
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSICSTGL RWLWLVVVVL IIDLGSKYLI LQNFALGDTV PLFPSLNLHY ARNYGAAFSF  60
   61 LADSGGWQRW FFAGIAIGIS VTLVVMMYRS KATQKLNNIA YALIIGGALG NLFDRLWHGF 120
  121 VVDMIDFYVG DWHFATFNLA DTAICVGAAL IVLEGFLPSK AKKQ

Type	Start	End	Confidence
Cytoplasmic	1	9	0.95
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	66	0.96
Transmembrane Helix	67	88	0.91
Cytoplasmic	89	97	0.85
Transmembrane Helix	98	118	0.91
Non-Cytoplasmic	119	133	0.93
Transmembrane Helix	134	157	0.87
Cytoplasmic	158	164	0.93