YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|551310\|gb\|AAB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIMALLAEP VVTTFVRAFL ILLLASAAIP KLRHGEEFFG VVRNFRLMPE WLARPFALVL  60
   61 PWLELGIAVG LVLPVTAPLA AGLAGGLMVL FGIAIAINVA RGRTAIDCGC FRNGMKQKLS 120
  121 WLLVGRNAGL ALAAFGLAWL LPVAPAAGPF DLAIGFAAAG LTMLLIYGAS LLSGLQSGAR 180
  181 SSQLSKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.73
Transmembrane Helix	13	30	0.91
Cytoplasmic	31	50	0.86
Transmembrane Helix	51	73	0.87
Non-Cytoplasmic	74	78	0.75
Transmembrane Helix	79	101	0.90
Cytoplasmic	102	121	0.92
Transmembrane Helix	122	143	0.93
Non-Cytoplasmic	144	151	0.82
Transmembrane Helix	152	175	0.89
Cytoplasmic	176	187	0.95