YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67157881, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLETFYDV MRRQGITRRS FLKYCSLTAA ALGLGPAFAP RIAHAMETKP RTPVLWLHGL  60
   61 ECTCCSESFI RSAHPLVKDV VLSMISLDYD DTLMAAAGHQ AEAALEETMR KYKGEYILAV 120
  121 EGNPPLNEDG MFCIVGGKPF IEQLRHVAKD AKAVIAWGSC ASWGCVQAAR PNPTQAVPIH 180
  181 KVITDKPIVK VPGCPPIAEV MTGVITYMLT FGKLPELDRQ GRPKMFYGQR IHDKCYRRPH 240
  241 FDAGQFVEHW DDEGARKGYC LYKVGCKGPT SYNACSTVRW NEGTSFPIQA GHGCIGCSED 300
  301 GFWDKGSFYE RLTTIPQFGI EKNADEIGAA VAGGVGAAIA AHAAVTAIKR LQNKGDRP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.61
Transmembrane Helix	21	40	0.61
Non-Cytoplasmic	41	358	0.93