YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPEP1_RABIT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTSWWLWPL VAVCTADSFL DQAVQILRVT PVIDGHNDLP WQLLNKFNNR LQDSRANLTV  60
   61 LADTHTNIPK LRAGFVGGQF WSAYTPCDTQ NKDTVRRTLE QMDVVHRMCQ LYPETFLCVT 120
  121 DSAGIQQAFR EGKVASLIGV EGGHSIDSSL GVLRALYRLG MRYLTLTHNC NTPWADNWLV 180
  181 DRGDDEAQSG GLSVFGQRVV REMNRLGVMI DLAHVSVATM KAALQLSTAP VIFSHSSAFT 240
  241 VCAHKRNVPD DVLQLVKETG SLVMVNFYND YVSCASEATL SQVADHLDYI KNVAGAAAVR 300
  301 FGGDFDGVTR LPVGLEDVSK YPDLVAELLR RGWTEAEVRG ALAENLLRVF REVEQVSNQA 360
  361 QVPEEEPISL EQLGGSCRTQ YGYSEAPSLH RRPGALLASL SLLLLSLGLL

Type	Start	End	Confidence
Signal Peptide	1	18	0.91
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	410	0.98