YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MURG_NITEU
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMAGGTGGH VFPGLAVARS MQANGWRIVW LGTRNGMEAA LVPQHGFSIE LINFSGLRGK  60
   61 KLSSYLLLPW RLAQACWQSF RILRRQQPQV VLGMGGYPAL PGGIMAVLLG KPLLIHEQNR 120
  121 IAGLTNKILA KIADRILLAF PGALTSPENK TRVTGNPVRT EIARLPSPEA RYAHRTGNLH 180
  181 ILVVGGSLGA QVLNTVLPQA LSMIPEDQRP YVTHQSGKAH LDALQQAYAD HGVTGNLVAF 240
  241 IENMAAHYQD CDLVICRAGA LTISELAAAG VASILIPYPY AVDDHQTANA RFLSDYQAAV 300
  301 LWPQSELTAA SLAQWLMTCS RAQLQSMATH ARALAMPEAA QTVAEACQQL SGQTNEA

Type	Start	End	Confidence
Cytoplasmic	1	89	0.59
Transmembrane Helix	90	110	0.68
Non-Cytoplasmic	111	357	0.82