YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153839053, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQNKRLMVM AGGTGGHVFP GLAVAKQLQE QGWEIRWLGT ADRMEADLVP KHGIEIDFIK  60
   61 VKGLRGQGVK RLLAAPFQII NAIMQARAHM KRWQPDAVLG MGGYVSGPGG IAAWLSGIPV 120
  121 VLHEQNAVAG LTNQWLSKIA KKVFQAFPGA FPSAAVVGNP VREDVTQLDE PAQRMQEREG 180
  181 PIRILVMGGS QGARILNQTL PAVMANLGQD YCIRHQAGKG AAQEVQAAYQ ANNVANAEVT 240
  241 EFIDDVAQAY AWADLLVCRS GALTVSEVSA AGVGAIFIPF MHKDRQQALN ADHLVECGAA 300
  301 KMIEQPDLTV ESLTQQIQQL DRQALLSMAQ KARSAAKLDA DKVVAQAIVA LTEKR

Type	Start	End	Confidence
Signal Peptide	1	23	0.58
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	355	0.89