YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NEC1_NICLS
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFGINSKI FQSMEMAILF LLAISIDRYC FAADEDMLQD VCVADLHSKV KVNGFPCKTN  60
   61 FTAADFSSLA ISKPGATNNK FGSVVTTANV EQVPGLNTLG VSLARIDYAP GGINPPHTHP 120
  121 RASEMVFVME GELDVGFITT ANVLVSKKII KGEVFVFPRG LVHFQKNNGE VPAAVISAFN 180
  181 SQLPGTQSIP ITLFGASPPV PDDVLAQTFQ INTEDVQQIK SKFAPVKKF

Type	Start	End	Confidence
Signal Peptide	1	32	0.89
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	229	0.99