YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOGG_CHICK
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSQCLVTI YAAAVLLGLR LQQGSCQHYL HIRPAPSDNL PLVDLIEHPD PIFDPKEKDL  60
   61 NETLLRSLMG GHFDPNFMAM SLPEDRLGVD DLAELDLLLR QRPSGAMPGE IKGLEFYDGL 120
  121 QPGKKHRLSK KLRRKLQMWL WSQTFCPVLY TWNDLGSRFW PRYVKVGSCY SKRSCSVPEG 180
  181 MVCKPAKSVH LTILRWRCQR RGGQRCTWIP IQYPIIAECK CSC

Type	Start	End	Confidence
Signal Peptide	1	26	0.74
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	223	0.97