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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NOTC1_XENLA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRIGLAVLL CSLPVLTQGL RCTQTAEMCL NGGRCEMTPG GTGVCLCGNL YFGERCQFPN  60
   61 PCTIKNQCMN FGTCEPVLQG NAIDFICHCP VGFTDKVCLT PVDNACVNNP CRNGGTCELL 120
  121 NSVTEYKCRC PPGWTGDSCQ QADPCASNPC ANGGKCLPFE IQYICKCPPG FHGATCKQDI 180
  181 NECSQNPCKN GGQCINEFGS YRCTCQNRFT GRNCDEPYVP CNPSPCLNGG TCRQTDDTSY 240
  241 DCTCLPGFSG QNCEENIDDC PSNNCRNGGT CVDGVNTYNC QCPPDWTGQY CTEDVDECQL 300
  301 MPNACQNGGT CHNTYGGYNC VCVNGWTGED CSENIDDCAN AACHSGATCH DRVASFYCEC 360
  361 PHGRTGLLCH LDNACISNPC NEGSNCDTNP VNGKAICTCP PGYTGPACNN DVDECSLGAN 420
  421 PCEHGGRCTN TLGSFQCNCP QGYAGPRCEI DVNECLSNPC QNDSTCLDQI GEFQCICMPG 480
  481 YEGLYCETNI DECASNPCLH NGKCIDKINE FRCDCPTGFS GNLCQHDFDE CTSTPCKNGA 540
  541 KCLDGPNSYT CQCTEGFTGR HCEQDINECI PDPCHYGTCK DGIATFTCLC RPGYTGRLCD 600
  601 NDINECLSKP CLNGGQCTDR ENGYICTCPK GTTGVNCETK IDDCASNLCD NGKCIDKIDG 660
  661 YECTCEPGYT GKLCNININE CDSNPCRNGG TCKDQINGFT CVCPDGYHDH MCLSEVNECN 720
  721 SNPCIHGACH DGVNGYKCDC EAGWSGSNCD INNNECESNP CMNGGTCKDM TGAYICTCKA 780
  781 GFSGPNCQTN INECSSNPCL NHGTCIDDVA GYKCNCMLPY TGAICEAVLA PCAGSPCKNG 840
  841 GRCKESEDFE TFSCECPPGW QGQTCEIDMN ECVNRPCRNG ATCQNTNGSY KCNCKPGYTG 900
  901 RNCEMDIDDC QPNPCHNGGS CSDGINMFFC NCPAGFRGPK CEEDINECAS NPCKNGANCT 960
  961 DCVNSYTCTC QPGFSGIHCE SNTPDCTESS CFNGGTCIDG INTFTCQCPP GFTGSYCQHD1020
 1021 INECDSKPCL NGGTCQDSYG TYKCTCPQGY TGLNCQNLVR WCDSSPCKNG GKCWQTNNFY1080
 1081 RCECKSGWTG VYCDVPSVSC EVAAKQQGVD IVHLCRNSGM CVDTGNTHFC RCQAGYTGSY1140
 1141 CEEQVDECSP NPCQNGATCT DYLGGYSCEC VAGYHGVNCS EEINECLSHP CQNGGTCIDL1200
 1201 INTYKCSCPR GTQGVHCEIN VDDCTPFYDS FTLEPKCFNN GKCIDRVGGY NCICPPGFVG1260
 1261 ERCEGDVNEC LSNPCDSRGT QNCIQLVNDY RCECRQGFTG RRCESVVDGC KGMPCRNGGT1320
 1321 CAVASNTERG FICKCPPGFD GATCEYDSRT CSNLRCQNGG TCISVLTSSK CVCSEGYTGA1380
 1381 TCQYPVISPC ASHPCYNGGT CQFFAEEPFF QCFCPKNFNG LFCHILDYEF PGGLGKNITP1440
 1441 PDNDDICENE QCSELADNKV CNANCNNHAC GWDGGDCSLN FNDPWKNCTQ SLQCWKYFND1500
 1501 GKCDSQCNNT GCLYDGFDCQ KVEVQCNPLY DQYCKDHFQD GHCDQGCNNA ECEWDGLDCA1560
 1561 NMPENLAEGT LVLVVLMPPE RLKNNSVNFL RELSRVLHTN VVFKKDSKGE YKIYPYYGNE1620
 1621 EELKKHHIKR STDYWSDAPS AIFSTMKESI LLGRHRRELD EMEVRGSIVY LEIDNRQCYK1680
 1681 SSSQCFNSAT DVAAFLGALA SLGSLDTLSY KIEAVKSENM ETPKPSTLYP MLSMLVIPLL1740
 1741 IIFVFMMVIV NKKRRREHGQ LWFPDGFIPK EPSKKKRRDR LGEDSVGLKP IKNMTDGSFM1800
 1801 DDNQNEWGDE ETLENKRFRF EEQVILPELV DDKTDPRQWT RQHLDAADLR ISSMAPTPPQ1860
 1861 GEIEADCMDV NVRGPDGFTP LMIASCSGGG LETGNSEEEE DASANMISDF IGQGAQLHNQ1920
 1921 TDRTGETALH LAARYARADA AKRLLESSAD ANVQDNMGRT PLHAAVAADA QGVFQILIRN1980
 1981 RATDLDARMF DGTTPLILAA RLAVEGMVEE LINAHADVNA VDEFGKSALH WAAAVNNVDA2040
 2041 AAVLLKNSAN KDMQNNKEET SLFLAAREGS YETAKVLLDH YANRDITDHM DRLPRDIAQE2100
 2101 RMHHDIVHLL DEYNLVKSPT LHNGPLGATT LSPPICSPNG YMGNMKPSVQ SKKARKPSIK2160
 2161 GNGCKEAKEL KARRKKSQDG KTTLLDSGSS GVLSPVDSLE STHGYLSDVS SPPLMTSPFQ2220
 2221 QSPSMPLNHL TSMPESQLGM NHINMATKQE MAAGSNRMAF DAMVPRLTHL NASSPNTIMS2280
 2281 NGSMHFTVGG APTMNSQCDW LARLQNGMVQ NQYDPIRNGI QQGNAQQAQA LQHGLMTSLH2340
 2341 NGLPATTLSQ MMTYQAMPNT RLANQPHLMQ AQQMQQQQNL QLHQSMQQQH HNSSTTSTHI2400
 2401 NSPFCSSDIS QTDLQQMSSN NIHSVMPQDT QIFAASLPSN LTQSMTTAQF LTPPSQHSYS2460
 2461 SPMDNTPSHQ LQVPDHPFLT PSPESPDQWS SSSPHSNMSD WSEGISSPPT SMQPQRTHIP2520
 2521 EAFK

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