YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHAAB_RHIME
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.58
Transmembrane Helix	31	49	0.90
Cytoplasmic	50	56	0.57
Transmembrane Helix	57	80	0.89
Non-Cytoplasmic	81	104	0.65
Transmembrane Helix	105	128	0.89
Cytoplasmic	129	137	0.56
Transmembrane Helix	138	172	0.81
Non-Cytoplasmic	173	190	0.30
Transmembrane Helix	191	214	0.89
Cytoplasmic	215	231	0.44
Transmembrane Helix	232	253	0.83
Non-Cytoplasmic	254	269	0.44
Transmembrane Helix	270	290	0.80
Cytoplasmic	291	297	0.47
Transmembrane Helix	298	320	0.94
Non-Cytoplasmic	321	331	0.50
Transmembrane Helix	332	360	0.78
Cytoplasmic	361	389	0.68
Transmembrane Helix	390	414	0.86
Non-Cytoplasmic	415	441	0.92
Transmembrane Helix	442	464	0.88
Cytoplasmic	465	483	0.94
Transmembrane Helix	484	504	0.91
Non-Cytoplasmic	505	530	0.86
Transmembrane Helix	531	552	0.91
Cytoplasmic	553	602	0.97
Transmembrane Helix	603	623	0.90
Non-Cytoplasmic	624	632	0.77
Transmembrane Helix	633	653	0.90
Cytoplasmic	654	659	0.84
Transmembrane Helix	660	680	0.93
Non-Cytoplasmic	681	686	0.74
Transmembrane Helix	687	708	0.91
Cytoplasmic	709	728	0.98
Transmembrane Helix	729	751	0.89
Non-Cytoplasmic	752	787	0.96
Transmembrane Helix	788	807	0.95
Cytoplasmic	808	849	0.91
Transmembrane Helix	850	868	0.93
Non-Cytoplasmic	869	875	0.76
Transmembrane Helix	876	895	0.93
Cytoplasmic	896	910	0.83
Transmembrane Helix	911	931	0.93
Non-Cytoplasmic	932	953	0.89
Transmembrane Helix	954	977	0.90
Cytoplasmic	978	999	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRPASVLAG PKSRPPIHSQ GDKTIEYAEK LLSVFILVPF AGSLIAIFFP SDQRGAISWF  60
   61 AGAIALVCFL VTAGLYPYVA SGGVLHYRID WVPELGLNFT LRMDGFAWLF SALITAIGVL 120
  121 VALYARYYMA EEDPVPRFFA LFLAFMGSML GVVLSGNLIL LAVFWELTSI VSFLLIGYWH 180
  181 HNAHARDGAR MALTITGTGG LAMFVGLIII GKIVGSYELD AVLASGDAIR NHPLYGTVLV 240
  241 LVLLGALTKS AQFPFHFWLP HAMAAPTPVS AYLHSATMVK AGVFLLVRFW PVMAGTEAWF 300
  301 WIVGLAGLTT LLLGAYFAIF QQDLKGLLAY STISHLGLIT VLLSLGSPLA AVAAVFHIVN 360
  361 HATFKASLFM AAGIIDHESG TRDIRRLGGL FHFMPITATL AMVASAAMAG VPLLNGFLSK 420
  421 EMFFAEAIET HLVNPLDTVT PYVATIAGMF AVTYSLRFIH GVFFGRPPAD LPRKPHEPPR 480
  481 WMRAPLDFLV LACLVVGIIP AQTIGPFLHT AVLSVLREGT PDYSLSVWHG WNIPLIMSFV 540
  541 ALSGGIGLYF LMRSYLATAV EGPPVFRLLQ GQRIFERVLV TLSWKWARWL EQRLGTRRLQ 600
  601 PQMRLLVFLA LAAGASPLLL GNFELPPLVI RGIDPAFALL WAIGIACAIG SAYQAKFHRL 660
  661 ASLVLLGGAG LVTCITFVWL SAPDLAVTQL LVEIVTTVLI LLGLRWLPKR IEEPVAAEDI 720
  721 SIRVRLRRLR DLLLAIGAGG GMMLIAYTVM TRPLPETIAS YFLERAYREG GGTNVVNVIL 780
  781 VDFRGFDTLG EIAVLCIVAL TVFALLLRFR PQSDSLEAPE QQKVQNAFDD DHPDRAAGDS 840
  841 VAEYLFIPAV IMRWMFPVTG MLAAFLFLRG HDLPGGGFAA GIAMSIGFIL QYMSGGTRWV 900
  901 EERLRIHPLR WMSIGLLVAT ATGVGSWFFG YPFLTSHAQY ASLPVVGKFP LASAILFDLG 960
  961 VFSLVLGATV LILIALAHQS VRAPRAHAKA ARSDKEAVR