YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSBY_SPIOL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATMATTMA VLNTKCLTLN TNKTTSTSPK PTSKPISLSP LGLSNSKLPM GLSPIITAPA  60
   61 IAGAVFATLG SVDPAFAVQQ LADIAAEAGT SDNRGLALLL PIIPALGWVL FNILQPALNQ 120
  121 INKMRNEKKA FIVGLGLSGL ATSGLLLATP EAQAASEEIA RGSDNRGTLL LLVVLPAIGW 180
  181 VLFNILQPAL NQLNKMRSQ

Type	Start	End	Confidence
Cytoplasmic	1	50	0.96
Transmembrane Helix	51	72	0.86
Non-Cytoplasmic	73	94	0.90
Transmembrane Helix	95	114	0.92
Cytoplasmic	115	129	0.83
Transmembrane Helix	130	149	0.95
Non-Cytoplasmic	150	167	0.87
Transmembrane Helix	168	187	0.94
Cytoplasmic	188	199	0.86