YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S28A1_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	96	0.92
Non-Cytoplasmic	97	103	0.75
Transmembrane Helix	104	124	0.95
Cytoplasmic	125	144	0.96
Transmembrane Helix	145	165	0.96
Non-Cytoplasmic	166	172	0.88
Transmembrane Helix	173	191	0.94
Cytoplasmic	192	200	0.76
Transmembrane Helix	201	219	0.92
Non-Cytoplasmic	220	234	0.77
Transmembrane Helix	235	253	0.80
Cytoplasmic	254	261	0.61
Transmembrane Helix	262	284	0.86
Non-Cytoplasmic	285	299	0.72
Transmembrane Helix	300	321	0.76
Cytoplasmic	322	332	0.67
Transmembrane Helix	333	355	0.87
Non-Cytoplasmic	356	361	0.60
Transmembrane Helix	362	381	0.64
Cytoplasmic	382	417	0.70
Transmembrane Helix	418	441	0.83
Non-Cytoplasmic	442	526	0.56
Transmembrane Helix	527	550	0.84
Cytoplasmic	551	563	0.56
Transmembrane Helix	564	587	0.87
Non-Cytoplasmic	588	658	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKASGRKSL ALSTAENGIE NAGLELTEEG INSEQTRRME VQGHSLSDDV RPATHQRSYL  60
   61 QPLTKARTFC QRHASLFKKI LLGLLCLAYA AYFLAACILD FQRALALFVI TCLVILVLLL 120
  121 HFLKKFLGKK LTRCLKPFKN SQLRLWIKRV FAGVSLVGLI LWLALDTAQR PEQLISFAGI 180
  181 CMFVLILFAC SKHHSAVSWR TVFWGLGLQF VFGLLVIRTD PGFIAFQWLG DQVQIFLAYT 240
  241 VAGSSFVLGD TLVNDVFAFQ SLPIIIFFGC VMSILYYLGL VQWVVQKIAW FLQVTMRTTA 300
  301 TETLAVAGNI FVGMTEAPLL IRPYLADLTL SEIHAVMTSG FATISGTVLG AFISFGIDAS 360
  361 SLISASVMGA PCALALSKLV YPEEEESKFK SKEGVKLPRG KESNVLEAAS NGATDAIALV 420
  421 ANVAANLVAF LAVLAFINAA LSWLGELVDI QGLTFQVICS YILRPMVYMM GVEWTDCPMV 480
  481 AEMVGIKFFT NEFVAYQQLS QYKKKRLSGM EEWIDGQKQW ISVRAEVITT FSLCGFANLS 540
  541 SIGITLGGLT SMVPHRKSDL SKVVIRALFT GSCVSFISAC VAGILYVPRG AETDCVSFLS 600
  601 TSFTNRSYET YVCCRELFQN TYLNGTNPPS FSGAWEDKAF SAMALANCCG FYNNTVCA