YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO2A1_RAT, S2A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.90
Transmembrane Helix	31	52	0.74
Non-Cytoplasmic	53	70	0.81
Transmembrane Helix	71	91	0.82
Cytoplasmic	92	99	0.86
Transmembrane Helix	100	121	0.92
Non-Cytoplasmic	122	168	0.98
Transmembrane Helix	169	192	0.83
Cytoplasmic	193	205	0.82
Transmembrane Helix	206	226	0.93
Non-Cytoplasmic	227	255	0.90
Transmembrane Helix	256	278	0.96
Cytoplasmic	279	320	0.97
Transmembrane Helix	321	344	0.88
Non-Cytoplasmic	345	364	0.81
Transmembrane Helix	365	385	0.92
Cytoplasmic	386	398	0.83
Transmembrane Helix	399	424	0.83
Non-Cytoplasmic	425	511	0.97
Transmembrane Helix	512	536	0.84
Cytoplasmic	537	555	0.78
Transmembrane Helix	556	575	0.83
Non-Cytoplasmic	576	604	0.96
Transmembrane Helix	605	625	0.86
Cytoplasmic	626	643	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLLKPGAR QGSGTSSVPD RRCPRSVFSN IKVFVLCHGL LQLCQLLYSA YFKSSLTTIE  60
   61 KRFGLSSSSS GLISSLNEIS NATLIIFISY FGSRVNRPRM IGIGGLLLAA GAFVLTLPHF 120
  121 LSEPYQYTST TDGNRSSFQT DLCQKHFGAL PPSKCHSTVP DTHKETSSLW GLMVVAQLLA 180
  181 GIGTVPIQPF GISYVDDFAE PTNSPLYISI LFAIAVFGPA FGYLLGSVML RIFVDYGRVD 240
  241 TATVNLSPGD PRWIGAWWLG LLISSGFLIV TSLPFFFFPR AMSRGAERSV TAEETMQTEE 300
  301 DKSRGSLMDF IKRFPRIFLR LLMNPLFMLV VLSQCTFSSV IAGLSTFLNK FLEKQYGATA 360
  361 AYANFLIGAV NLPAAALGML FGGILMKRFV FPLQTIPRVA ATIITISMIL CVPLFFMGCS 420
  421 TSAVAEVYPP STSSSIHPQQ PPACRRDCSC PDSFFHPVCG DNGVEYVSPC HAGCSSTNTS 480
  481 SEASKEPIYL NCSCVSGGSA SQDRLMPHVL RALLLPSIFL ISFAALIACI SHNPLYMMVL 540
  541 RVVNQDEKSF AIGVQFLLMR LLAWLPAPSL YGLLIDSSCV RWNYLCSGRR GACAYYDNDA 600
  601 LRNRYLGLQM VYKALGTLLL FFISWRMKKN REYSLQENTS GLI