YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S6A12_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.91
Transmembrane Helix	45	64	0.81
Non-Cytoplasmic	65	73	0.77
Transmembrane Helix	74	96	0.88
Cytoplasmic	97	117	0.79
Transmembrane Helix	118	145	0.74
Non-Cytoplasmic	146	208	0.95
Transmembrane Helix	209	229	0.94
Cytoplasmic	230	237	0.89
Transmembrane Helix	238	260	0.89
Non-Cytoplasmic	261	290	0.88
Transmembrane Helix	291	309	0.94
Cytoplasmic	310	321	0.82
Transmembrane Helix	322	343	0.94
Non-Cytoplasmic	344	379	0.87
Transmembrane Helix	380	404	0.75
Cytoplasmic	405	422	0.94
Transmembrane Helix	423	445	0.90
Non-Cytoplasmic	446	453	0.82
Transmembrane Helix	454	478	0.90
Cytoplasmic	479	496	0.95
Transmembrane Helix	497	517	0.93
Non-Cytoplasmic	518	537	0.90
Transmembrane Helix	538	559	0.96
Cytoplasmic	560	614	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKVTVHED GCPVVSWVPE EGEMMDQKDK DQVKDRGQWT NKMEFVLSVA GEIIGLGNVW  60
   61 RFPYLCYKNG GGAFFIPYFI FFFSCGIPVF FLEVALGQYS SQGSVTAWRK ICPLLQGIGM 120
  121 ASVVIESYLN IYYIIILAWA LFYLFSSFTW ELPWTTCTNS WNTEHCVDFL NYSSTRAASY 180
  181 SENFTSPVME FWERRVLGIT SGIHDLGSLR WELALCLLLA WIICYFCIWK GVKSTGKVVY 240
  241 FTATFPYLML IILLIRGVTL PGAYQGIVFY LKPDLLRLKD PQVWMDAGTQ IFFSFAICQG 300
  301 CLTALGSYNK YHNNCYRDSI ALCFLNSATS FVAGFVVFSI LGFMAQEQGV PISEVAESGP 360
  361 GLAFIAFPKA VTMMPLSQLW SCLFFLMLLF LGLDSQFVCM ECLVTASMDM FPQQLRKRGR 420
  421 RELLILAVAI VCYLMGLLLV TEGGMYIFQL FDYYASSGIC LLFLSLFEVI CIGWVYGADR 480
  481 FYDNVEDMIG YRPWPLVKIS WLFLTPGLCL ATFFFSLSKY TPLKYNNVYI YPSWGYSIGW 540
  541 LLAFSSMACV PLFIIITLLK TQGSFKKRLQ RLITPDPSLP QPGRRSPQDG SSAQNCSTSP 600
  601 VKQELIAWEK ETHL