YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5D_TOBAC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDYLKQFVE ETSFYNRLVL GTFMPESWWG PLPHMLQGWL RNYIGGVLLY FISGFLWCFY  60
   61 IYHLKRNVYI PKDAIPSNKA MLLQISVAMK AMPWYCALPS LSEYMIENGW TKCFARISDV 120
  121 GWLSYVIYAA IYLVIVEFGI YWMHMELHDI KPLYKYLHAT HHIYNKQNTL SPFAGLAFHP 180
  181 LDGILQAVPH VVALLLVPMH FSTHIALIFL EALWTANIHD CIHGKVFPVM GAGYHTIHHR 240
  241 TYRHNYGHYT IWMDWMFGTL RDPVEEDAKK M

Type	Start	End	Confidence
Cytoplasmic	1	13	0.62
Transmembrane Helix	14	32	0.48
Non-Cytoplasmic	33	38	0.74
Transmembrane Helix	39	62	0.86
Cytoplasmic	63	120	0.64
Transmembrane Helix	121	143	0.87
Non-Cytoplasmic	144	186	0.62
Transmembrane Helix	187	208	0.73
Cytoplasmic	209	271	0.78