YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC62_YARLI, SEC6...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTENVPQGQI TMPLQQGGAR EISPQALAVA DYLRSHKLLK QRPGILNGKR SDFFRVKRAI  60
   61 RALEDPKYKQ LQSKPNSKLP PINSRNEAIS IFRLMPINQM ALRVDKLPTQ TALMMKQKPE 120
  121 QGVPVLQVNP QQEFGDDMYY TWFYNPVPLT TYLYGALGVA AIFAGVLFPL WPIFLRQGVW 180
  181 YLSVGMLGLI GVFFGIALVR LVIFVLTWPT VKPGIWIFPN LFADVGFVDS FIPLWAWHGT 240
  241 PERDLLPQKF KNKKKKKNAG TVIESKEPPR KLTKEEKQKQ KEANAQMEQM QAAFQTQLSS 300
  301 FATQMQQIKE MSDSGIDPQI IAAQLQAQYP PDKQAAIKLE NEQAQAKLDE RIRELAAQIQ 360
  361 DKTNANKTGD KIEEVADKEN KEAPKRIVTL EDANDE

Type	Start	End	Confidence
Cytoplasmic	1	150	0.79
Transmembrane Helix	151	173	0.91
Non-Cytoplasmic	174	180	0.65
Transmembrane Helix	181	204	0.89
Cytoplasmic	205	215	0.65
Transmembrane Helix	216	238	0.82
Non-Cytoplasmic	239	396	0.72