YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGPP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.96
Transmembrane Helix	117	140	0.85
Non-Cytoplasmic	141	146	0.85
Transmembrane Helix	147	170	0.76
Cytoplasmic	171	190	0.90
Transmembrane Helix	191	213	0.84
Non-Cytoplasmic	214	219	0.75
Transmembrane Helix	220	240	0.91
Cytoplasmic	241	245	0.81
Transmembrane Helix	246	267	0.89
Non-Cytoplasmic	268	278	0.82
Transmembrane Helix	279	298	0.94
Cytoplasmic	299	310	0.70
Transmembrane Helix	311	330	0.89
Non-Cytoplasmic	331	345	0.84
Transmembrane Helix	346	368	0.85
Cytoplasmic	369	404	0.94
Transmembrane Helix	405	426	0.91
Non-Cytoplasmic	427	430	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGQRLALL AIRLQEPQRV ASFQRLCGVE VPLGSPKAGE DAETEVRGAP GDPRRRPRQS  60
   61 GADGSPAKPD CCGAPNGVRN GLAAEPGPTG PRRAGSLRRN SLTGEEGELA KVSNLPLYYL 120
  121 FCFGTELGNE LFYIIFFPFW IWNLDPFVGR RLVIIWVLVM YLGQCTKDII RWPRPASPPV 180
  181 IKLEIFYNSE YSMPSTHAMS GTAIPIAMIL LTYGRWQYPL IYGLILIPCW SSLVCLSRIY 240
  241 MGMHSILDVI AGFLYTILIL IIFYPLVDLI DNFNQTYKYA PLIIIGLHLI LGIFSFTLDT 300
  301 WSTSRGDTAE ILGSGAGIAC GSHAAYNLGI SLDPSLHTLP LAIPPLTVTL FGKAILRVVI 360
  361 GMLLVLFVRD IMKKVTIPLA CKLFGIPCHD LRQARQHMEV ELPYRYITYG TVGFSITFLI 420
  421 PYIFSFIGIS