YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TWHH_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRLHLKQF ALLCFISLLL TPCGLACGPG RGYGKRRHPK KLTPLAYKQF IPNVAEKTLG  60
   61 ASGKYEGKIT RNSERFKELI PNYNPDIIFK DEENTNADRL MTKRCKDKLN SLAISVMNHW 120
  121 PGVKLRVTEG WDEDGHHLEE SLHYEGRAVD ITTSDRDKSK YGMLSRLAVE AGFDWVYYES 180
  181 KAHIHCSVKA ENSVAAKSGG CFPGSGTVTL GDGTRKPIKD LKVGDRVLAA DEKGNVLISD 240
  241 FIMFIDHDPT TRRQFIVIET SEPFTKLTLT AAHLVFVGNS SAASGITATF ASNVKPGDTV 300
  301 LVWEDTCESL KSVTVKRIYT EEHEGSFAPV TAHGTIIVDQ VLASCYAVIE NHKWAHWAFA 360
  361 PVRLCHKLMT WLFPARESNV NFQEDGIHWY SNMLFHIGSW LLDRDSFHPL GILHLS

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	416	0.99