YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP1_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFQVIILA LIQGLTEFLP ISSSAHLILP AQLLGWEDQG LSFDVAVNTG SLFAVVIYFR  60
   61 HELWAMFKAW IASIVKGQHS DDSKLAWWII LATLPAVFFG FMAKDFIATH LRNTGVIAVT 120
  121 TVVFGLLLWW ADKMSRHDLT IYQTGWRKAL LIGFAQALAL IPGTSRSGAT MTAALMLGLS 180
  181 RDAAARFSFL MSVPVSLGAA ILVGKDLAES PLPIDYQALT LGTVISFAAA YLCIHYFLKI 240
  241 ISRMGMTPFV IYRLALGAVL CGFIFL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	29	0.81
Non-Cytoplasmic	30	40	0.68
Transmembrane Helix	41	64	0.80
Cytoplasmic	65	84	0.73
Transmembrane Helix	85	103	0.96
Non-Cytoplasmic	104	110	0.57
Transmembrane Helix	111	131	0.91
Cytoplasmic	132	148	0.68
Transmembrane Helix	149	170	0.70
Non-Cytoplasmic	171	182	0.51
Transmembrane Helix	183	204	0.83
Cytoplasmic	205	215	0.45
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	244	0.44
Transmembrane Helix	245	265	0.83
Cytoplasmic	266	266	0.53