YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30255337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVEGLTEF LPVSSTGHMI LTGHLIGFDD DRAKVFEVVI QLGSILAVVV IFWKRLWSLV  60
   61 GIGKVTDGPS LNLLHIIIGM IPAGVLGVLF HSAIKEVLFG PGPVVISLVA GGILMIVAEK 120
  121 FSKPSTARTL DEITYKQAFT IGMFQCLALW PGFSRSGSTI SGGLLARVSH TAAAEYTFIL 180
  181 AVPMMVAASG LDLIKSWDIL STADIPLFAT GFITAFVVAM LAIVSFLKLL SRVKLTPFAY 240
  241 YRFILAAVFY FFIM

Type	Start	End	Confidence
Cytoplasmic	1	9	0.60
Transmembrane Helix	10	28	0.63
Non-Cytoplasmic	29	34	0.62
Transmembrane Helix	35	57	0.85
Cytoplasmic	58	70	0.65
Transmembrane Helix	71	93	0.89
Non-Cytoplasmic	94	97	0.59
Transmembrane Helix	98	118	0.92
Cytoplasmic	119	171	0.46
Transmembrane Helix	172	194	0.76
Non-Cytoplasmic	195	204	0.62
Transmembrane Helix	205	227	0.90
Cytoplasmic	228	237	0.54
Transmembrane Helix	238	253	0.92
Non-Cytoplasmic	254	254	0.67