YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP2_STRCO, UPP...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWFESLVLG LVQGLTEFLP VSSSAHLRLT AAFSGWHDPG AAFTAITQIG TEAAVLIYFR  60
   61 KDIGRIIAAW TRSLTDKSMR HDPDARMGWL VIVGSIPIGV LGLTLKDQIE GPFRDLRITA 120
  121 TMLIVVGVII GIADRMAARD EKGGRHRAPQ QRKELENLGV RDGLIYGLCQ AAALIPGVSR 180
  181 SGATISGGLF MGYRREAAAR YSFLLAIPAV LASGVFELKD AMESDHVSWG PTLFATVIAF 240
  241 ATGYVVIAWF MKFISTKSFM PFVWYRIALG IVIIVLVSVG VLSPHAAESG G

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	27	0.53
Non-Cytoplasmic	28	39	0.64
Transmembrane Helix	40	59	0.74
Cytoplasmic	60	86	0.90
Transmembrane Helix	87	105	0.96
Non-Cytoplasmic	106	115	0.84
Transmembrane Helix	116	138	0.89
Cytoplasmic	139	196	0.89
Transmembrane Helix	197	218	0.83
Non-Cytoplasmic	219	231	0.76
Transmembrane Helix	232	251	0.95
Cytoplasmic	252	261	0.81
Transmembrane Helix	262	286	0.88
Non-Cytoplasmic	287	291	0.87