YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIMHAAVLG ILQGLTEILP ISSSAHLILV PWLLGWPESG LTFDVGLHVG TLIALCVYFR  60
   61 RDIAYLISDA ITGLREGFGS QTSRLPFFII AGTVPAAIAG KTLEKPIEEF FRGSHTLIAL 120
  121 LLIAFGLLLA LADTTGPKRW RMDRVDLRGA LLIGLAQCLA LIPGVSRSGI TITAALFLGF 180
  181 TRDTAARFSF LLSLPIVAGA GILKMGELAR HGIPAGELAP LLAGMATSAV SGYLGVALLL 240
  241 RLVQRYSLYP FVWYRLLAGG AVLAYLFAR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	40	0.74
Transmembrane Helix	41	59	0.89
Cytoplasmic	60	81	0.83
Transmembrane Helix	82	103	0.84
Non-Cytoplasmic	104	112	0.85
Transmembrane Helix	113	132	0.92
Cytoplasmic	133	148	0.76
Transmembrane Helix	149	171	0.82
Non-Cytoplasmic	172	184	0.69
Transmembrane Helix	185	206	0.88
Cytoplasmic	207	217	0.81
Transmembrane Helix	218	240	0.89
Non-Cytoplasmic	241	250	0.66
Transmembrane Helix	251	268	0.95
Cytoplasmic	269	269	0.89