YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSIC_SHIDS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYVIKRLL GLIPTLFIVS VLVFLFVHML PGDPARLIAG PEADAQVIEL VRQQLGLDQP  60
   61 LYHQFWHYIS NAVQGDFGLS MVSRRPVADE IASRFMPTLW LTITSMVWAV IFGMAAGIIA 120
  121 AVWRNRWPDR LSMTIAVSGI SFPAFALGML LIQVFSVELG WLPTVGADSW QHYILPSLTL 180
  181 GAAVAAVMAR FTRASFVDVL SEDYMRTARA KGVSETWVVL KHGLRNAMIP VVTMMGLQFG 240
  241 FLLGGSIVVE KVFNWPGLGR LLVDSVEMRD YPVIQAEILL FSLEFILINL VVDVLYAAIN 300
  301 PAIRYK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	100	0.97
Transmembrane Helix	101	123	0.91
Cytoplasmic	124	132	0.86
Transmembrane Helix	133	155	0.90
Non-Cytoplasmic	156	171	0.87
Transmembrane Helix	172	192	0.91
Cytoplasmic	193	226	0.95
Transmembrane Helix	227	249	0.88
Non-Cytoplasmic	250	277	0.91
Transmembrane Helix	278	299	0.88
Cytoplasmic	300	306	0.84