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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41349446
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAAGIRAPE AAGADGTRLA PGGSPCLRRR GRPEESPAAV VAPRGAGELQ AAGAPLRFHP  60
   61 ASPRRLHPAS TPGPAWGWLL RRRRWAALLV LGLLVAGAAD GCELVPRHLR GRRATGSAAT 120
  121 AASSPAAAAG DSPALMTDPC MSLSPPCFTE EDRFSLEALQ TIHKQMDDDK DGGIEVEESD 180
  181 EFIREDMKYK DATNKHSHLH REDKHITIED LWKRWKTSEV HNWTLEDTLQ WLIEFVELPQ 240
  241 YEKNFRDNNV KGTTLPRIAV HEPSFMISQL KISDRSHRQK LQLKALDVVL FGPLTRPPHN 300
  301 WMKDFILTVS IVIGVGGCWF AYTQNKTSKE HVAKMMKDLE SLQTAEQSLM DLQERLEKAQ 360
  361 EENRNVAVEK QNLERKMMDE INYAKEEACR LRELREGAEC ELSRRQYAEQ ELEQVRMALK 420
  421 KAEKEFELRS SWSVPDALQK WLQLTHEVEV QYYNIKRQNA EMQLAIAKDE AEKIKKKRST 480
  481 VFGTLHVAHS SSLDEVDHKI LEAKKALSEL TTCLRERLFR WQQIEKICGF QIAHNSGLPS 540
  541 LTSSLYSDHS WVVMPRVSIP PYPIAGGVDD LDEDTPPIVS QFPGTMAKPP GSLARSSSLC 600
  601 RSRRSIVPSS PQPQRAQLAP HAPHPSHPRH PHHPQHTPHS LPSPDPDILS VSSCPALYRN 660
  661 EEEEEAIYFS AEKQWEVPDT ASECDSLNSS IGRKQSPPLS LEIYQTLSPR KISRDEVSLE 720
  721 DSSRGDSPVT VDVSWGSPDC VGLTETKSMI FSPASKVYNG ILEKSCSMNQ LSSGIPVPKP 780
  781 RHTSCSSAGN DSKPVQEAPS VARISSIPHD LCHNGEKSKK PSKIKSLFKK KSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle