YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45709323, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPRLLDFQ KTKYARFMNH RVPAHKRYQP TEYEHAANCA THAFWIIPSI LGSSNLYFLS  60
   61 DDDWETISAW IYGLGLCGLF VVSTVFHTIS WKKSHLRMVE HCIHMFDRMV IYFFIAASYA 120
  121 PWLNLRELGP WASHMRWLVW IMASVGTIYV FFFHERYKLV ELLCYVVMGF FPALVILSMP 180
  181 NTEGIWELVT GGVFYCLGMV FFKSDGRIPF AHAIWHLFVA FGAGTHYYAI WRYLYLPSTL 240
  241 QTKVSK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.89
Transmembrane Helix	39	59	0.84
Non-Cytoplasmic	60	67	0.88
Transmembrane Helix	68	89	0.94
Cytoplasmic	90	104	0.88
Transmembrane Helix	105	123	0.90
Non-Cytoplasmic	124	132	0.82
Transmembrane Helix	133	153	0.92
Cytoplasmic	154	161	0.77
Transmembrane Helix	162	179	0.94
Non-Cytoplasmic	180	183	0.82
Transmembrane Helix	184	202	0.81
Cytoplasmic	203	211	0.68
Transmembrane Helix	212	230	0.95
Non-Cytoplasmic	231	246	0.78