YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nha1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	224	0.95
Transmembrane Helix	225	244	0.94
Non-Cytoplasmic	245	252	0.69
Transmembrane Helix	253	272	0.87
Cytoplasmic	273	334	0.79
Transmembrane Helix	335	357	0.86
Non-Cytoplasmic	358	362	0.83
Transmembrane Helix	363	385	0.93
Cytoplasmic	386	397	0.85
Transmembrane Helix	398	421	0.88
Non-Cytoplasmic	422	433	0.77
Transmembrane Helix	434	455	0.93
Cytoplasmic	456	465	0.85
Transmembrane Helix	466	484	0.95
Non-Cytoplasmic	485	491	0.78
Transmembrane Helix	492	510	0.85
Cytoplasmic	511	524	0.74
Transmembrane Helix	525	544	0.91
Non-Cytoplasmic	545	552	0.68
Transmembrane Helix	553	577	0.84
Cytoplasmic	578	586	0.81
Transmembrane Helix	587	608	0.66
Non-Cytoplasmic	609	624	0.72
Transmembrane Helix	625	648	0.85
Cytoplasmic	649	715	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSHKKMTA TGEPEAREDP SVGGAPATIT TPTTIIAPTP IPVPSDVPMP NSNGSGNGAG  60
   61 NHRSTIVIES QPKRRVSIIS DPPMIGGNGG LGTGYDNPAY EQNPRRKISQ TSTHSHTDIG 120
  121 PARRKSILKD TAPHDNESDR VSTHSYENYR QNALDVLNAK YNGHQMGHNG GGSSNGGANY 180
  181 VEESWMYNFC LKCRGEEPSA SWEPPFWQKI FPYPLCPTFR TVSRLISIIL IGVLIWVTAF 240
  241 VIIGDSAAPG GQLFGLVVLT VAANFGGYLI SLTTLPRLIG MLLVGILFQN VGWADIDGDF 300
  301 SKVTAHLRKF ALTIILTRAG LEMEPEAFKK VYKTILKLGI IPWCVEAVVM AVMSHFLLDL 360
  361 PWIWAFLLGS IIAAVSPAVV VPCLFRLRTK GYGVAKGIPT LVVAVAGVDD ALSVAIFGII 420
  421 STVMFSDKGL AYQIAQAPVC ILGGLGFGVV WGSLARIFPE KGDAYVVPLR TLLLFTGGLM 480
  481 AIYGSEELGF EGAGPLAVVF SAFVSNLFWC KDGWDVEDNP VSTAFEIFWM IFEPILFGLT 540
  541 GATIKIRELD SHTVSIGAAC IFTGAILRIL TTAGIAFGDR LNTKEKFFVG LSWMAKATVQ 600
  601 AALGPVALKH LGDDATEEER NWANIVQTIC VFSIVLTAPL GAIMISVTGT KLLTKTKQPQ 660
  661 DLSGWRRSHR PSIRDISIID EEEEREDPEI PEDKETHDNT LNNAHIPSIS YTYNT