YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45550148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	51	0.81
Non-Cytoplasmic	52	57	0.68
Transmembrane Helix	58	88	0.70
Cytoplasmic	89	101	0.74
Transmembrane Helix	102	126	0.87
Non-Cytoplasmic	127	202	0.97
Transmembrane Helix	203	225	0.90
Cytoplasmic	226	233	0.93
Transmembrane Helix	234	256	0.92
Non-Cytoplasmic	257	276	0.88
Transmembrane Helix	277	299	0.84
Cytoplasmic	300	311	0.74
Transmembrane Helix	312	334	0.88
Non-Cytoplasmic	335	376	0.94
Transmembrane Helix	377	398	0.93
Cytoplasmic	399	415	0.92
Transmembrane Helix	416	439	0.91
Non-Cytoplasmic	440	446	0.87
Transmembrane Helix	447	467	0.96
Cytoplasmic	468	487	0.97
Transmembrane Helix	488	511	0.94
Non-Cytoplasmic	512	519	0.83
Transmembrane Helix	520	544	0.88
Cytoplasmic	545	596	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYETSYDTG HKPFSPDLNR GKWDKPTDFM FACFGLALKL DVFVASFWMF FDMGILGILP  60
   61 YFVYMSIYLV PIMVIHSFMG QFSSSGFISA FRLSPFFKGM GYVSGFLTIS MLIYYSIFAA 120
  121 VPLLFIINSF RPTLPWSCEG LSSWHNGSAT LSSSCNKTLI LEDFSEYNRS HQLLHVPSVL 180
  181 YFQNHYDSMQ QDAVPDWYKD YELSWHFVGL FAIIWVVIAF IFYKFSETAK FGKLIRYMVI 240
  241 VTLVLLLVCF VRFLFLPGAL NGLHRYVTPK ASDMAMGVVS TFIMVLHAFG AGWGSVITLS 300
  301 SFNGFKTDIM SYSWIISFGQ IFIYIMFGMV SFMLEHYFNG NKLSDVDDNG HVLSHWLLYL 360
  361 SSASALSTMA WPNLWTFIYY SMLLIAALIV MTTQIFTVLQ SLFDEFEVLR VRKQEVTFGL 420
  421 IGGIALCSFY FCTNHGIIFF SALGLDAIFS HSLLHLLLLL VVLWIYGRER FQRDIEFMLG 480
  481 QPFASWKVFI LRFIAPIILV ICLLAGIALS ISEHSYSTTV VFVMSIVLVV LPILAIPGYG 540
  541 FYYLYQSTGT FCERFKRTCR PTDWYPVEME HRQQYEEAVD NTEMTHQLFE VTEEVN