YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|451659, gi\|66...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.94
Transmembrane Helix	96	116	0.78
Non-Cytoplasmic	117	135	0.77
Transmembrane Helix	136	156	0.92
Cytoplasmic	157	165	0.67
Transmembrane Helix	166	184	0.85
Non-Cytoplasmic	185	222	0.70
Transmembrane Helix	223	245	0.87
Cytoplasmic	246	293	0.84
Transmembrane Helix	294	313	0.76
Non-Cytoplasmic	314	333	0.85
Transmembrane Helix	334	355	0.94
Cytoplasmic	356	482	0.98
Transmembrane Helix	483	504	0.94
Non-Cytoplasmic	505	511	0.86
Transmembrane Helix	512	531	0.90
Cytoplasmic	532	545	0.75
Transmembrane Helix	546	566	0.85
Non-Cytoplasmic	567	608	0.64
Transmembrane Helix	609	632	0.89
Cytoplasmic	633	642	0.58
Transmembrane Helix	643	662	0.70
Non-Cytoplasmic	663	685	0.70
Transmembrane Helix	686	708	0.84
Cytoplasmic	709	1134	0.77
Transmembrane Helix	1135	1157	0.87
Non-Cytoplasmic	1158	1175	0.75
Transmembrane Helix	1176	1197	0.64
Cytoplasmic	1198	1205	0.48
Transmembrane Helix	1206	1226	0.89
Non-Cytoplasmic	1227	1269	0.54
Transmembrane Helix	1270	1292	0.85
Cytoplasmic	1293	1382	0.61
Transmembrane Helix	1383	1405	0.95
Non-Cytoplasmic	1406	1462	0.87
Transmembrane Helix	1463	1481	0.91
Cytoplasmic	1482	1492	0.81
Transmembrane Helix	1493	1516	0.85
Non-Cytoplasmic	1517	1585	0.50
Transmembrane Helix	1586	1605	0.92
Cytoplasmic	1606	1670	0.56
Transmembrane Helix	1671	1696	0.87
Non-Cytoplasmic	1697	2288	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFGDELGG RYGGTGGGER ARGGGAGGAG GPGQGGLPPG QRVLYKQSIA QRARTMALYN  60
   61 PIPVKQNCFT VNRSLFVFSE DNVVRKYAKR ITEWPPFEYM ILATIIANCI VLALEQHLPD 120
  121 GDKTPMSERL DDTEPYFIGI FCFEAGIKII ALGFVFHKGS YLRNGWNVMD FVVVLTGILA 180
  181 TAGTDFDLRT LRAVRVLRPL KLVSGIPSLQ VVLKSIMKAM VPLLQIGLLL FFAILMFGII 240
  241 GLEFYMGKFH KACFPNSTDT EPVGDFPCGK DPPARQCDGD TECREYWPGP NFGITNFDNI 300
  301 LFAILTVFQC ITMEGWTDIL YNTNDAAGNT WNWLYFIPLI IIGSFFMLNL VLGVLSGEFA 360
  361 KERERVENRR AFLKLRRQQQ IERELNGYLE WIFKAEEVML AEEDKNAEEK SPLDVLKRAA 420
  421 TKKSRNDLIH AEEGEDRFVD LCAVGSPFAR ASLKSGKTES SSYFRRKEKM FRFFIRRMVK 480
  481 AQSFYWVVLC VVALNTLCVA MVHYNQPQRL TTALYFAEFV FLGLFLTEMS LKMYGLGPRS 540
  541 YFRSSFNCFD FGVIVGSIFE VVWAAIKPGT SFGISVLRAL RLLRIFKVTK YWNSLRNLVV 600
  601 SLLNSMKSII SLLFLLFLFI VVFALLGMQL FGGQFNFQDE TPTTIFDTFP AAILTVFQIL 660
  661 TGEDWNAVMY HGIESQGGVS KGMFSSFYFI VLTLFGNYTL LNVFLAIAVD NLANAQELTK 720
  721 DEEEMEEAAN QKLALQKAKE VAEVSPMSAA NISIAAQENS AKARSVWEQR ASQLRLQNLR 780
  781 ASCEALYSEM DPEERLRYAS TRHVRPDMKT HMDRPLVVEP GRDGLRGPVG SKSKPEGTEA 840
  841 TESADLPRRH HRHRDRDKTS ATAPAGGEQD RTESTETGPR EERARPRRSH SKETPGADTQ 900
  901 VRCERSRRHH RRGSPEEATE REPRRHRAHR HAQDSSKEGT APVLVPKGER RARHRGPRTG 960
  961 PREAENNEEP TRRHRARHKV PPTLQPPERE AAEKESNAVE GDKETRNHQP KEPHCDLEAI1020
 1021 AVTGVGPLHM LPSTCLQKVD EQPEDADNQR NVTRMGSQPS DPSTTVHVPV TLTGPPGETP1080
 1081 VVPSGNMNLE GQAEGKKEAE ADDVLRRGPR PIVPYSSMFC LSPTNLFRRF CHYIVTMRYL1140
 1141 EMVILVVIAL SSIALAAEDP VRTDSFRNNA LEYMDYIFTG VFTCEMVIKM IDLGLLLHPG1200
 1201 AYFRDLWNIL DFIVVSGALV AFAFSGSKGK DINTIKSLRV LRVLRPLKTI KRLPKLKAVF1260
 1261 DCVVNSLKNV LNILIVYMLF MFIFAVIAVQ LFKGKFFYCT DESKELERDC RGQYLDYEKE1320
 1321 EVEAQPRQWK KYDFHYDNVL WALLTLFTVS TGEGWPMVLK HSVDATYEEQ GPSPGFRMEL1380
 1381 SILYVVYFVV FPFFFVNIFV ALIIITFQEQ GDKVMSECSL EKNERACIDF AISAKPLTRY1440
 1441 MPQNKQSFQY KTWTFVVSPP FEYFIMAMIA LNTVVLMMKF YDAPYEYELM LKCLNIVFTS1500
 1501 MFSMECILKI IAFGVLNYFR DAWNVFDFVT VLGSITDILV TEIAETNNFI NLSFLRLFRA1560
 1561 ARLIKLLRQG YTIRILLWTF VQSFKALPYV CLLIAMLFFI YAIIGMQVFG NSALDDDTSI1620
 1621 NRHNNFRTFL QAIMLLFRSA TGEAWHEIML SCLDNRACDP HANASECGSD FAYFYFVSFI1680
 1681 FLCSFLMLNL FVAVIMDNFE YLTRDSSILG PHHLDEFIRV WAEYDPAACG RISYNDMFEM1740
 1741 LKHMSPPLGL GKKCPARVAY KRLVRMNMPI SNEDMTVHFT STLMALIRTA LEIKLAPADE1800
 1801 MTVGKVYAAL MIFDFYKQNK TTRDQTHQAP GGLSQMGPVS LFHPLKATLE QTQPAVLRGA1860
 1861 RVFLRQKSAT SLSNGGAIQT QESGSRSRCP GGRRGTQDAL YEGRAPLERD HSKEIPVGQS1920
 1921 GTLLVDVQMQ NMTLRGPDGD PQPGLESQGR AASMLRLAAE TQPAPNASPM KRSISTLAPR1980
 1981 PDGTQLCSTV LDRPPPSQAS HHHHHRCHRR RDKKQRSLEK GPSLSVDPEG APSTAAAGPG2040
 2041 LPHGEGSTAC RRDRKQERGR SQERRQPSSS SSEKQRFYSC DRLGAGSPQL MPSLSSHPTS2100
 2101 PAAALEPAPH PQGSGSVNGS PLMSTSGAIT PGRGGRRQLP QTPLTPRPSI TYKTANSSPV2160
 2161 HFAEGQSGLP AFSPGRLSRG LSEHNALLQK EPLSQPLAPG SRIGSDPYLG QRLDSEASAH2220
 2221 TLPEDTLTFE EAVATNSGRS SRTSYVSSLT SQSHPLRRVP NGYHCTLGLN TGVGARASYH2280
 2281 HPDQDHWC