YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1747306, gi\|6...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	373	0.99
Transmembrane Helix	374	395	0.95
Cytoplasmic	396	415	0.88
Transmembrane Helix	416	435	0.96
Non-Cytoplasmic	436	443	0.86
Transmembrane Helix	444	466	0.90
Cytoplasmic	467	479	0.89
Transmembrane Helix	480	501	0.88
Non-Cytoplasmic	502	514	0.83
Transmembrane Helix	515	535	0.81
Cytoplasmic	536	569	0.86
Transmembrane Helix	570	589	0.92
Non-Cytoplasmic	590	592	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPQITLRV LVIALLTCSV TAYPNGKVPM SCGGMIPQHN HSPQSEPIHQ ITVSQTTFKP  60
   61 EDQIEVTLSG PPFRGFLLEA RDAENLSGPP IGSFTLIDSE ESQLLTCTDV QGLAVSHTRS 120
  121 SKKTEIKVYW DAPSPAPDHI RFLATVVQKF KIYWVKIPSP VISQPNAPPF TTPKATTQPL 180
  181 TTPPSVSHLT KPFSAFECGN KKFCVRSPLN CDPEKEPACV FLSFTRDNQS VMVEMSGPSD 240
  241 GYVSFAFSHD QWMGDDDAYL CIREDQTVDI QPSYLTGRSY PVMDSRGTLE DMAWRLADGV 300
  301 IQCSFRRNIT LPEAKNRFVL NESYYIFFAE GPSHDGRIFR HSQQPLITYE KYNVTDTPKS 360
  361 VGGSRSSPLL KAHGALMFVA WMTTVSIGVL VARFFRSVWS KAFFLREAAW FQVHRMLMIA 420
  421 TSLLTCVGFV LPFVYRGGWS WRAGYHPYLG CTVMTLAVLQ PLLATFRPPL HDPRRQVFNW 480
  481 THWSVGTAAR IIAVAAMFLG MDLPGLNLPS PQKTYAMMGF VVWHIGTEVI LEIHAYRLSR 540
  541 KVEILDNDRI QILQSLTVAE AEGHVFKKVV LAVYICGNVI FLSIFLSAIN HI