YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42734483, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLHQISVIP ARETASNGRS SMGRNKEKNK EVENEKSPGR SASRSSNISK ASSPTTGTAP  60
   61 RSQSRLSVCP STQDICRICH CEGDEESPLI TPCRCTGTLR FVHQSCLHQW IKSSDTRCCE 120
  121 LCKYDFIMET KLKPLRKWEK LQMTTSERRK IFCSVTFHVI AVTCVVWSLY VLIDRTAEEI 180
  181 KQGNDNGVLE WPFWTKLVVV AIGFTGGLVF MYVQCKVYVQ LWRRLKAYNR VIFVQNCPDT 240
  241 ANKLEKNFPC NVNTEIKDAV VVPVPQTGSN TLPTAEGAPP EVIPV

Type	Start	End	Confidence
Cytoplasmic	1	150	0.99
Transmembrane Helix	151	173	0.91
Non-Cytoplasmic	174	192	0.96
Transmembrane Helix	193	215	0.90
Cytoplasmic	216	285	0.97