YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27664194, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRPWVFCVL LFPCSSAHSD SWMPLVNLTQ RLLRDANSSF SSNCWVCLSI QTQRSLAVPA  60
   61 PLRSWTETPM KLRIMYSART LSGSYPITDL ERRLQNFQPL TPHYSFVNPD RRAIAFLQVT 120
  121 SITGILPILS RLTPVKYPND RFYESAQRPI WGSLSTQTIL TAQAPLCISR FFKNSKYATF 180
  181 VGNLSASLCN HTFQLSPSAN HQSIDLSTSY AFAPLMAMPG LKWRNPLHFS GPPSLNSGKP 240
  241 HHSCPVDDIH CHTYPTTPWR YCPSFLSSST CYNLTLFEPN NVSHPITLSV DTTYFKIKLQ 300
  301 GHKDPYPLFQ YQPLMGAALS GQYSIWENEP NVQENGGLTP NIFSHLVSLT YSFCLNSSGV 360
  361 FFLCGNSTYV CLPANWSGVC TLVFQYPDIE LLPNNQSIMV PLFATVPSSV PASRRKRALH 420
  421 LLPLAAGLGI ASALGLGAAG IATSTMYFQK LSKALSNSLD EVATSILSLQ DQIDSLAGVV 480
  481 LQNRRALDLL VAEKGGTCLF LQEECCFYIN QSGVVRYAAR KLRERASELG PSSRSWIQQL 540
  541 GLGPWLPSWL TSFMGPILFI LVVLVLGPCL LNCLTHSVSR RMSSFIHTTT KGHVDKILLH 600
  601 RETQYKRLPQ EPQEEDSV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle